diff --git a/Makefile b/Makefile
index 0e1507f8c0..eb80a08d0b 100644
--- a/Makefile
+++ b/Makefile
@@ -302,7 +302,7 @@ cli-dependencies:
 	@ $(CP_R) thirdparty/*.dll.config .
 
 native-dependencies:
-	@./configure
+	@./thirdparty/configure-native-deps.sh
 
 version: mods/ra/mod.yaml mods/cnc/mod.yaml mods/d2k/mod.yaml mods/modchooser/mod.yaml
 	@for i in $? ; do \
diff --git a/configure b/thirdparty/configure-native-deps.sh
similarity index 100%
rename from configure
rename to thirdparty/configure-native-deps.sh